Issues

• SciUnit test to reproduce additional muscle patch clamp data in the muscle model

  openworm/muscle_model#64 · Filter by author slarson opened on Feb 19, 2017
  7

  

• Add to the readme to create a well cited and reasoned case for the ideal set of ion channels that should be in the muscle model

  openworm/muscle_model#63 · Filter by author slarson opened on Feb 14, 2017
  8

  

• Create tests to catch performance regressions in specific functions

  testing
  openworm/muscle_model#51 · Filter by author gsarma opened on Aug 9, 2015 · Adapt validation framework from PyOpenWorm and ChannelWorm to the muscle model

• Check for performance regressions in testing suite

  testing
  openworm/muscle_model#50 · Filter by author gsarma opened on Aug 9, 2015 · Adapt validation framework from PyOpenWorm and ChannelWorm to the muscle model
  1

• Integrate the test in the test suite being run on TravisCI

  testing
  openworm/muscle_model#44 · Filter by author travs opened on Jun 21, 2015 · Create unit test on the full muscle model that reproduces Figure 1A from Liu, Hollopeter, & Jorgensen 2009

• Turn the error-generating script into a SciUnit test

  sciunittesting
  openworm/muscle_model#43 · Filter by author travs opened on Jun 21, 2015 · Create unit test on the full muscle model that reproduces Figure 1A from Liu, Hollopeter, & Jorgensen 2009

• Write a script that generates an overlaid image of the simulated and digitized data

  openworm/muscle_model#42 · Filter by author travs opened on Jun 21, 2015 · Create unit test on the full muscle model that reproduces Figure 1A from Liu, Hollopeter, & Jorgensen 2009
  1

• Write a script that takes the digitized figure and the simulation output and calculates the error/difference

  openworm/muscle_model#41 · Filter by author travs opened on Jun 21, 2015 · Create unit test on the full muscle model that reproduces Figure 1A from Liu, Hollopeter, & Jorgensen 2009

• Document muscle_model testing framework

  testing
  openworm/muscle_model#39 · Filter by author travs opened on Jun 21, 2015 · Adapt validation framework from PyOpenWorm and ChannelWorm to the muscle model

• Write SciUnit validation tests for muscle_model

  sciunittesting
  openworm/muscle_model#38 · Filter by author travs opened on Jun 21, 2015 · Adapt validation framework from PyOpenWorm and ChannelWorm to the muscle model
  10

  

• Write doctests for muscle_model

  ready
  openworm/muscle_model#36 · Filter by author travs opened on Jun 21, 2015 · Adapt validation framework from PyOpenWorm and ChannelWorm to the muscle model
  16

  

• Draft workflow outline for validation tests

  sciunittesting
  openworm/muscle_model#33 · Filter by author travs opened on May 7, 2015 · Adapt validation framework from PyOpenWorm and ChannelWorm to the muscle model

• Improve Geppetto version of muscle model

  enhancement
  openworm/muscle_model#32 · Filter by author slarson opened on Feb 8, 2015
  3

• Define parameters for simulated experiment using jNeuroML on the command line, based on the methods that went into the figure

  enhancementin progress
  openworm/muscle_model#31 · Filter by author slarson opened on Jan 18, 2015 · Create unit test on the full muscle model that reproduces Figure 1A from Liu, Hollopeter, & Jorgensen 2009
  19

  

• Create unit test that verifies correct I/V curve for ca_boyle NML2 channel

  enhancementsciunittesting
  openworm/muscle_model#30 · Filter by author slarson opened on Jan 18, 2015 · Adapt validation framework from PyOpenWorm and ChannelWorm to the muscle model
  13

  

• Print out values from python / matlab implementations and compare with values from NeuroML2

  enhancement
  openworm/muscle_model#28 · Filter by author slarson opened on Jan 18, 2015
  8

• Update README.md with new sections

  openworm/muscle_model#15 · Filter by author slarson opened on Nov 27, 2014
  7