Issues

• Automated Reporting for Systems Biology Modeling Workflows

  Difficulty: MediumGitHubHTMLPythonSBMLSED-MLSize: 175h
  nrnb/GoogleSummerOfCode#281 · Filter by author matthiaskoenig opened on Jan 28, 2026
  15

  

• Provide established Metabolic Systems Biology tooling for Reconstruction and Analysis with LLMs

  Difficulty: MediumDockerJSONPythonSize: 175h
  nrnb/GoogleSummerOfCode#280 · Filter by author Schmoho opened on Jan 27, 2026
  11

  

• Advancing Web-Based SBGN Editing and Visualization

  Cytoscape.jsDifficulty: MediumJavaScriptSize: 175h
  nrnb/GoogleSummerOfCode#278 · Filter by author cannin opened on Jan 14, 2026
  19

  

• Improve the Validation of SBGN Diagrams

  Difficulty: MediumJavaScriptPythonSBGNSize: 175hXML
  nrnb/GoogleSummerOfCode#277 · Filter by author cannin opened on Jan 9, 2026
  15

  

• Curation Support Tools for the Creation of a Lung Cancer Disease Map

  Difficulty: MediumLLMPythonSize: 175h
  nrnb/GoogleSummerOfCode#262 · Filter by author cannin opened on Feb 28, 2025
  21

  

• COBRAxy: constraint-based metabolic modeling in Galaxy

  Difficulty: MediumGalaxyPythonSize: 175h
  nrnb/GoogleSummerOfCode#248 · Filter by author kiaradamiani opened on Jan 22, 2025
  19

  

• Improving Cytoscape.js layout utilities

  Cytoscape.jsDifficulty: HardJavaScriptSize: 175h
  nrnb/GoogleSummerOfCode#247 · Filter by author ugurdogrusoz opened on Jan 22, 2025
  8

  

• Assisting the creation of SBGN diagrams using large language models (LLMs)

  CSSDifficulty: MediumHTMLJavaScriptLLMSBGNSize: 175h
  nrnb/GoogleSummerOfCode#245 · Filter by author hasanbalci opened on Jan 10, 2025
  19

  

• Getting the complexity score from SBOL files to streamline DNA synthesis using standards

  Difficulty: MediumPythonSBOLSize: 175h
  nrnb/GoogleSummerOfCode#241 · Filter by author Gonza10V opened on Mar 25, 2024
  13

  

• Cytoscape Automated Testing Suite for Biomedical Visualization

  CytoscapeDifficulty: MediumJavaScriptPythonRESTSize: 175h
  nrnb/GoogleSummerOfCode#233 · Filter by author jingjingbic opened on Jan 14, 2024
  15

  

• Large Network Renderer

  CytoscapeDifficulty: MediumHierarchical networkHiViewJavaScriptJSONNDExOpenGLSize: 175h
  nrnb/GoogleSummerOfCode#229 · Filter by author jingjingbic opened on Jan 12, 2024
  14

  

• Prototype COSE Network Layout Algorithm to Support Biological Context for Layouts More Intuitive to Humans

  Cytoscape.jsDifficulty: MediumJavaScriptJSONSize: 175h
  nrnb/GoogleSummerOfCode#219 · Filter by author cannin opened on Jan 20, 2023
  19