Pan-genome inference and genotyping with long noisy or short accurate reads
C++ 121 15
Genome inference from a population reference graph
C++ 96 15
Plasmid analysis using rearrangement distances
Python 56 3
CRyPTIC data processing pipelines
HTML 36 23
Python 30 6
Code to create a PRG from a Multiple Sequence Alignment file
Python 26 7
Variant call verification
Workflow to simulate SARS-CoV-2 amplicons and reads.
Virus assembler from amplicon sequencing reads
COBS - Compact Bit-Sliced Signature Index (for Genomic k-Mer Data or q-Grams)
