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UniProt entry ADT and parsers

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data.uniprot

An ADT and flat-file parser for UniProt entries. Reasonably fast and with minimal memory overhead, designed for one-entry-at-a-time processing.

Missing features

  • No support for any of the reference lines; parsers will jsut skip them.
  • Some extra information part of some database cross-references is not parsed
  • The model for feature types is a bit primitive, lacking type-specific information
  • The OG, OX lines are not parsed; see #9 and #10

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UniProt entry ADT and parsers

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